Links to HPC centre documentation
This page collects together general information and resources for working with different computing clusters hosted by HPC centres and universities affiliated with PerMedCoE.
The page is split into three sections:
- General links to user documentation
- Links split by topics
- Tutorial on working with computing clusters
A non-exhaustive list of computing clusters and their hosts:
- BSC: MareNostrum4, CTE-ARM, CTE-Power, CTE-AMD
- CSC: Mahti, Puhti, LUMI
- The University of Luxembourg: Aion, Iris
General links to user documentation
User guide landing pages for PerMedCoE computing clusters
- BSC Support Knowledge Center
- CSC Docs
- The University of Luxembourg HPC Facility user guide
- LUMI Documentation (in progress)
Links split by topics
For corresponding information on additional computing environments hosted by BSC (e.g. CTE-Power and CTE-AMD), please visit the BSC Support Knowledge Center.
Computing cluster overviews
General information on computing clusters hosted by PerMedCoE partners
File systems and disk areas
Information on file systems, disk area layouts and their usage
- Aion and Iris
- CTE-ARM
- Mahti and Puhti
- MareNostrum4
Further information on disk areas of computing clusters hosted by BSC:
Data management and transfer
Information on data management and transfer
- Aion and Iris
- CTE-ARM
- Mahti and Puhti
- MareNostrum4
Modules and applications
Information on module systems, their use and available applications
Submitting batch jobs
Guidance on preparing batch job files and submitting jobs using batch job systems
Licence and acknowledgements
These materials were created as part of the PerMedCoE project are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.
The PerMedCoE project has received funding from the European Union’s Horizon 2020 research and innovation programme under the grant agreement Nº 951773.